Professor D James Nokes
Professor of Infectious Disease Epidemiology
Email: Jnokes@kemri-wellcome.org
Email: D.J.Nokes@warwick.ac.uk
Twitter: @nokesdj
Nokes webpage
Research Clusters
Microbiology & Infectious Disease
Warwick Centres and GRPs
Zeeman Institute for Systems Biology & Infectious Disease Epidemiology Research (SBIDER)
Research/Teaching Interests
The focus of the research of my team is to gain a better understanding of how viruses spread in human populations with the aim of developing improved intervention strategies, particularly in low and middle income countries (LMICs) such as Kenya.
Most of this work has been directed to the little known respiratory syncytial virus (RSV) which is, in fact, the major cause of childhood pneumonia globally and against which there is no licensed vaccine. More recently, attention has turned to COVID-19 transmission and control.
Our research involves community collection of samples (such as nasal swabs to detect virus and blood samples to detect antibodies specific to a virus), molecular diagnostics, whole genome sequencing and associated bioinformatic analysis, serological epidemiology (looking at virus specific antibodies) and modelling infection dynamics and simulating intervention strategies.
My team is principally based in Kenya at the KEMRI-Wellcome Trust Research Programme and linked to the School of Life Sciences and the Zeeman Institute at Warwick. The work has relevance to the design of interventions such as vaccination and we report to the Kenya Ministry of Health. An important element is capacity building through a range of professional development, including Diploma and Master’s project students and PhD training. .
Research: Technical Summary
The development of optimal control strategies for endemic and emerging pathogens is underpinned by detailed understanding of the epidemiology of the pathogen-host system. The research of my group based at KEMRI-Wellcome Trust Research Programme (KWTRP), Kilifi Kenya, focuses on describing the rates, patterns, and mechanisms of transmission of respiratory and enteric viruses of medical importance in low resource settings. Our key focus over the last 20 years has been on respiratory syncytial virus (RSV) as a major cause of lower respiratory tract disease in young children and of more recently work on SARS-CoV-2 during the pandemic.
We link national and health facility case surveillance, spatio-temporal seroprevalence and household-based cohort study data with laboratory molecular diagnostics, genomic sequencing and epidemiological analysis, immunoepidemiology and transmission dynamic modelling. The central objective is to improve understanding of the spread of pathogens through populations, in the context of community structure and social interactions and virus antigenic diversity and evolution, through which to develop optimal control programme design. This work is in close collaboration with members of the Zeeman Institute at Warwick (Director Matt Keeling).
We are involved in disease burden estimation and cost-effectiveness evaluation of vaccine interventions. KWTRP runs the largest Health and Demographic Surveillance System in Africa which, for example, we have used to evaluate the impact of the introduction of rotavirus vaccine into the infant immunization schedule and estimate disease burden of a range of respiratory viruses. Through collaboration with CDC-Kenya and London School of Hygiene and Tropical Medicine we have linked disease burden and cost data for RSV to assess the cost-effectiveness of a monoclonal antibody birth dose or maternal RSV vaccination. We have described the genomic epidemiology and transmission dynamics of SARS-CoV-2 in Kenya providing forecasts of the potential impact of changes to interventions, introduction of immune evading variants and of different vaccination strategies for reduction of COVID-19 disease. This work is relayed directly to the Ministry of Health, Government of Kenya through Policy Briefs.
- Director, NIHR Global Health Research Project, Application of genomics and modelling to the control of virus pathogens in East Africa (GeMVi) 2018-22
- Member, National COVID-19 Modelling Technical Committee, Kenya 2020-present
- Honorary Research Fellow, Nuffield Department of Medicine, University of Oxford, 2016-19
- Chairman of Epidemiology and Demography Department, Kenya Medical Research Institute (KEMRI) 2012-15
- Senior Research Scientist, KWTRP 2001-present
- Professor, School of Life Sciences, University of Warwick 2009-present
- Lecturer, Senior Lecturer, Reader, School of Life Sciences, University of Warwick 1999-2009
- Royal Society University Research Fellow, Imperial/Oxford/Warwick 1990-99
- PDRA Imperial College 1987-90
- PhD Parasite Epidemiology Imperial College 1983-87
- BSc Zoology Imperial College 1979-82
- Lambisia, Arnold W., Murunga, Nickson, Mutunga, Martin, Cheruiyot, Robinson, Maina, Grace, Makori, Timothy O., Nokes, D. James, Agoti, Charles N., 2024. Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019?2022. Gut Pathogens, 16 (1)
- Cong, Bingbing, Koç, U?urcan, Bandeira, Teresa, Bassat, Quique, Bont, Louis, Chakhunashvili, Giorgi, Cohen, Cheryl, Desnoyers, Christine, Hammitt, Laura L., Heikkinen, Terho, Huang, Q Sue, Marki?, Jo?ko, Mira-Iglesias, Ainara, Moyes, Jocelyn, Nokes, D. James, Yung, Chee Fu, Zar, Heather J., Feikin, Daniel R., Sparrow, Erin G., Respiratory Virus Global Epidemiology Network, et al (Select to open full list), 2024. Changes in the global hospitalisation burden of respiratory syncytial virus in young children during the COVID-19 pandemic : a systematic analysis. Lancet Infectious Diseases
- Lambisia, Arnold W., Makori, Timothy O., Mutunga, Martin, Cheruiyot, Robinson, Murunga, Nickson, Quick, Joshua, Githinji, George, Nokes, D. James, Houldcroft, Charlotte J., Agoti, Charles N., 2023. Genomic epidemiology of Human Adenovirus F40 and F41 in Coastal Kenya : a retrospective hospital-based surveillance study (2013-2022). Virus Evolution
- Brand, Samuel P. C., Cavallaro, Massimo, Cumming, Fergus, Turner, Charlie, Florence, Isaac, Blomquist, Paula, Hilton, Joe, Guzman-Rincon, Laura, House, Thomas, Nokes, D. James, Keeling, Matthew James, 2023. The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom. Nature Communications, 14
- Nyiro, Joyce U., Nyawanda, Bryan O., Bukusi, Elizabeth, Mureithi, Marianne W., Murunga, Nickson, Nokes, D. James, Bigogo, Godfrey, Otieno, Nancy A., Opere, Victor A., Ouma, Alice, Pecenka, Clint, Munywoki, Patrick K., 2023. Assessment of gestational age at antenatal care visits among Kenyan women to inform delivery of a maternal respiratory syncytial virus (RSV) vaccine in low- and middle-income countries. Wellcome Open Research, 8
- Mwanga, Mike J., Lambisia, Arnold W., Mwita Morobe, John, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, Guzman-Rincon, Laura M., Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N., Nyiro, Joyce, Githinji, George, 2023. A new Omicron lineage with Spike Y451H mutation that dominated a new COVID-19 wave in Kilifi, Coastal Kenya : March-May 2023. Emerging Infectious Diseases
- Brand, Samuel, Cavallaro, Massimo, Cumming, Fergus, Turner, Charlie, Florence, Isaac, Blomquist, Paula, Hilton, Joe, Guzman-Rincon, Laura, House, Thomas A., Nokes, James, Keeling, Matthew James, 2023. The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom. Nature Communications, 14
- Gallagher, Katherine E., Nyiro, Joyce, Agoti, Charles N., Maitha, Eric, Nyagwange, James, Karani, Angela, Bottomley, Christian, Murunga, Nickson, Githinji, George, Mutunga, Martin, Ochola-Oyier, Lynette Isabella, Kombe, Ivy, Nyaguara, Amek, Kagucia, E. Wangeci, Warimwe, George, Agweyu, Ambrose, Tsofa, Benjamin, Bejon, Philip, Scott, Anthony G., Nokes, David J., 2023. Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households : a prospective cohort study. Influenza and Other Respiratory Viruses, 17 (9)
- Mwanga, Mike J., Lambisia, Arnold W., Morobe, John Mwita, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, Guzmán-Rincón, Laura M., Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N., Nyiro, Joyce, Githinji, George, 2023. New SARS-CoV-2 Omicron variant with spike protein mutation Y451H, Kilifi, Kenya, March?May 2023. Emerging Infectious Diseases, 29 (11), pp. 2376-2379
- Owuor, D. Collins, de Laurent, Zaydah R., Nyawanda, Bryan O., Emukule, Gideon O., Kondor, Rebecca, Barnes, John R., Nokes, D. James, Agoti, Charles N., Chaves, Sandra S., 2023. Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons. Scientific Reports
- Collins Owuor, D., de Laurent, Zaydah R., Nyawanda, Bryan O., Emukule, Gideon O., Kondor, Rebecca, Barnes, John R., Nokes, D. James, Agoti, Charles N., Chaves, Sandra S., 2023. Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons. Scientific Reports, 13
- 'Agoti, Charles N., 'Ochola-Oyier, Lynette Isabella, 'Dellicour, Simon, 'Mohammed, Khadija Said, 'Lambisia, Arnold W., 'de Laurent, Zaydah R., 'Morobe, John M., 'Mburu, Maureen W., 'Omuoyo, Donwilliams O., 'Ongera, Edidah M., 'Ndwiga, Leonard, 'Maitha, Eric, 'Kitole, Benson, 'Suleiman, Thani, 'Mwakinangu, Mohamed, 'Nyambu, John K., 'Otieno, John, 'Salim, Barke, 'Musyoki, Jennifer, 'Murunga, Nickson et al (Select to open full list), 2022. 'Transmission networks of SARS-CoV-2 in coastal Kenya during the first two waves : a retrospective genomic study. eLife, 11
- 'Morobe, John Mwita, 'Pool, Brigitte, 'Marie, Lina, 'Didon, Dwayne, 'Lambisia, Arnold W., 'Makori, Timothy, 'Mohammed, Khadija Said, 'de Laurent, Zaydah R., 'Ndwiga, Leonard, 'Mburu, Maureen W., 'Moraa, Edidah, 'Murunga, Nickson, 'Musyoki, Jennifer, 'Mwacharo, Jedida, 'Nyamako, Lydia, 'Riako, Debra, 'Ephnatus, Pariken, 'Gambo, Faith, 'Naimani, Josephine, 'Namulondo, Joyce et al (Select to open full list), 2022. 'Genomic epidemiology of SARS-CoV-2 in Seychelles, 2020?2021. Viruses, 14 (6)
- 'Agoti, Charles N., 'Curran, Martin D., 'Murunga, Nickson, 'Ngari, Moses, 'Muthumbi, Ester, 'Lambisia, Arnold, 'Frost, Simon D. W., 'Blacklaws, Barbara, 'Nokes, D. James, 'Drumright, Lydia N., 2022. 'Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya. Gut Pathogens, 14
- 'Lambisia, Arnold W., 'Mohammed, Khadija S., 'Makori, Timothy O., 'Ndwiga, Leonard, 'Mburu, Maureen W., 'Morobe, John M., 'Moraa, Edidah O., 'Musyoki, Jennifer, 'Murunga, Nickson, 'Mwangi, Jane N., 'Nokes, D. James, 'Agoti, Charles N., 'Ochola-Oyier, Lynette Isabella, 'Githinji, George, 2022. 'Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol. Frontiers in Medicine, 9
- 'Orangi, Stacey, 'Ojal, John, 'Brand, Samuel P. C., 'Orlendo, Cameline, 'Kairu, Angela, 'Aziza, Rabia, 'Ogero, Morris, 'Agweyu, Ambrose, 'Warimwe, George M., 'Uyoga, Sophie, 'Otieno, Edward, 'Ochola-Oyier, Lynette I., 'Agoti, Charles N., 'Kasera, Kadondi, 'Amoth, Patrick, 'Mwangangi, Mercy, 'Aman, Rashid, 'Ng'ang'a, Wangari, 'Adetifa, Ifedayo M. O., 'Scott, J. Anthony G. et al (Select to open full list), 2022. 'Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya. BMJ Global Health, 7 (8)
- 'Hilton, Joe, 'Riley, Heather, 'Pellis, Lorenzo, 'Aziza, Rabia, 'Brand, Samuel P. C., 'Kombe, Ivy K., 'Ojal, John, 'Parisi, Andrea, 'Keeling, Matt J., 'Nokes, D. James, 'Manson-Sawko, Robert, 'House, Thomas, 2022. 'A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic. PLoS Computational Biology, 18 (9)
- Etyang, Anthony O., Lucinde, Ruth, Karanja, Henry, Kalu, Catherine, Mugo, Daisy, Nyagwange, James, Gitonga, John, Tuju, James, Wanjiku, Perpetual, Karani, Angela, Mutua, Shadrack, Maroko, Hosea, Nzomo, Eddy, Maitha, Eric, Kamuri, Evanson, Kaugiria, Thuranira, Weru, Justus, Ochola, Lucy B., Kilimo, Nelson, Charo, Sande et al (Select to open full list), 2022. Seroprevalence of antibodies to SARS-CoV-2 among health care workers in Kenya. Clinical Infectious Diseases, 74 (2), pp. 288-293
- Nokes, D. James, 2022. Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019 : a systematic analysis. The Lancet, 399 (10340), pp. 2047-2064
- Nyagwange, James, Ndwiga, Leonard, Muteru, Kelvin, Wamae, Kevin, Tuju, James, testing team, COVID, Kutima, Bernadette, Gitonga, John, Karanja, Henry, Mugo, Daisy, Kasera, Kadondi, Amoth, Patrick, Murunga, Nickson, Babu, Lawrence, Otieno, Edward, Githinji, George, Nokes, D. James, Tsofa, Benjamin, Orindi, Benedict, Barasa, Edwine et al (Select to open full list), 2022. Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya [version 1; peer review: 2 approved]. Wellcome Open Research, 7
- Wangui, J., Nokes, D. James, Mobegi, V., Otieno, J. R., Agoit, C. N., Ngeranwa, J. N., Bulimo, W., 2022. Spatial-temporal distribution and sequence diversity of Group A human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype. Influenza and Other Respiratory Viruses, 16 (3), pp. 501-510
- Phan, My V. T., Agoti, Charles N., Munywoki, Patrick K., Otieno, Grieven Paul, Ngama, Mwanajuma, Kellam, Paul, Cotton, Matthew, Nokes, D. James, 2022. Identification of missed respiratory viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Scientific Reports, 12
- Bottomley, C., Otiende, M., Uyoga, S., Gallagher, K., Kagucia, E. W., Etyang, A. O., Mugo, D., Gitonga, J., Karanja, H., Nyagwange, J., Adetifa, I. M. O., Agweyu, A., Nokes, D. J., Warimwe, G. M., Scott, J. A. G., 2021. Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. Nature Communications, 12
- Morobe, John Mwita, Kamau, Everlyn, Murunga, Nickson, Gatua, Winfred, Luka, Martha M., Lewa, Clement, Cheruiyot, Robinson, Mutunga, Martin, Odundo, Calleb, Nokes, D. James, Agoti, Charles N., 2021. Trends and intensity of Rhinovirus invasions in Kilifi, coastal Kenya, over a 12-year period, 2007?2018. Open Forum Infectious Diseases, 8 (12)
- Mousa, Andria, Winskill, Peter, Watson, Oliver J., Ratmann, Oliver, Monod, Mélodie, Ajelli, Marco, Diallo, Aldiouma, Dodd, Peter J., Grijalva, Carlos G., Kiti, Moses Chapa, Krishnan, Anand, Kumar, Rakesh, Kumar, Supriya, Kwok, Kin On, Lanata, Claudio F., de Waroux, Olivier Le Polain, Leung, Kathy, Mahikul, Wiriya, Melegaro, Alessia, Morrow, Carl D. et al (Select to open full list), 2021. Social contact patterns and implications for infectious disease transmission : a systematic review and meta-analysis of contact surveys. eLife, 10
- 'Wilkinson, Eduan, 'Giovanetti, Marta, 'Tegally, Houriiyah, 'San, James E., 'Lessells, Richard, 'Cuadros, Diego, 'Martin, Darren P., 'Rasmussen, David A., 'Zekri, Abdel-Rahman N., 'Sangare, Abdoul K., 'Ouedraogo, Abdoul-Salam, 'Sesay, Abdul K., 'Priscilla, Abechi, 'Kemi, Adedotun-Sulaiman, 'Olubusuyi, Adewunmi M., 'Oluwapelumi, Adeyemi O. O., 'Hammami, Adn?ne, 'Amuri, Adrienne A., 'Sayed, Ahmad, 'Ouma, Ahmed E. O. et al (Select to open full list), 2021. 'A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. Science, 374 (6566), pp. 423-431
- Owuor, D. Collins, de Laurent, Zaydah R., Kikwai, Gilbert K., Mayieka, Lillian M., Ochieng, Melvin, Müller, Nicola F., Otieno, Nancy A., Emukule, Gideon O., Hunsperger, Elizabeth A., Garten, Rebecca, Barnes, John R., Chaves, Sandra S., Nokes, D. James, Agoti, Charles N., 2021. Characterizing the countrywide epidemic spread of influenza A(H1N1)pdm09 virus in Kenya between 2009 and 2018. Viruses, 13 (10)
- Mazur, Natalie I., Löwensteyn, Yvette N., Willemsen, Joukje E., Gill, Christopher J., Forman, Leah, Mwananyanda, Lawrence M., Blau, Dianna M., Breiman, Robert F., Madhi, Shabir A., Mahtab, Sana, Gurley, Emily S., El Arifeen, Shams, Assefa, Nega, Scott, J. Anthony G., Onyango, Dickens, Tippet Barr, Beth A., Kotloff, Karen L., Sow, Samba O., Mandomando, Inacio, Ogbuanu, Ikechukwu et al (Select to open full list), 2021. Global respiratory syncytial virus?related infant community deaths. Clinical Infectious Diseases, 73 (Supplement 3), pp. S229-S237
- Luka, Martha M., Kamau, Everlyn, de Laurent, Zaydah R., Morobe, John Mwita, Alii, Leonard K., Nokes, D. James, Agoti, Charles N., 2021. Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018. Wellcome Open Research, 6
- Del Fava, Emanuele, Adema, Irene, Kiti, Moses C., Poletti, Piero, Merler, Stefano, Nokes, D. James, Manfredi, Piero, Melegaro, Alessia, 2021. Individual's daily behaviour and intergenerational mixing in different social contexts of Kenya. Scientific Reports, 11 (1)
- Parisi, Andrea, Brand, Samuel, Hilton, Joe, Aziza, Rabia, Keeling, Matt J., Nokes, D. James, 2021. Spatially resolved simulations of the spread of COVID-19 in three European countries. PLOS Computational Biology, 17 (7)
- Brand, Samuel, Ojal, John, Aziza, Rabia, Were, Vincent, Okiro, Emelda A., Kombe, Ivy K, Mburu, Caroline, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M., Nyagwange, James, Karanja, Henry, Gitonga, John N., Mugo, Daisy, Uyoga, Sophie, Adetifa, Ifedayo M. O., Scott, J. Anthony G., Otieno, Edward, Murunga, Nickson, Otiende, Mark et al (Select to open full list), 2021. COVID-19 transmission dynamics underlying epidemic waves in Kenya. Science, 374 (6570), pp. 989-994
- Githinji, George, de Laurent, Zaydah R., Mohammed, Khadija Said, Omuovo, Donwilliams O., Macharia, Peter M., Morobe, John M., Otieno, Edward, Kinyanjui, Samson M., Agweyu, Ambrose, Maitha, Eric, Kitole, Ben, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John, Otieno, John, Salim, Barke, Kasera, Kadondi, Kijru, John, Aman, Rashid, Barasa, Edwine et al (Select to open full list), 2021. Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya. Nature Communications, 12
- Lambisia, Arnold W., Phan, My V. T., de Laurent, Zaydah R., Cotten, Matthew, Nokes, D. James, Agoti, Charles N., 2021. Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019. Microbiology Resource Announcements, 10 (15)
- Kombe, Ivy K., Agoti, Charles N., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James, Medley, Graham, 2021. Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission. Scientific Reports, 11
- Mburu, C. N., Ojal, J., Chebet, R., Akech, D., Karia, B., Tuju, J., Sigilai, A., Abbas, K., Jit, M., Funk, S., Smits, G., van Gageldonk, P. G. M., van der Klis , F. R. M., Tabu, C., Nokes, D. James, LSHTM CMMID COVID19 Working Group,, Scott, J. A. G., Flasche, S., Adetifa, I. M. O., 2021. The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC Medicine, 19
- Oketch, John W., Everlyn, Everlyn, Otieno, James R., Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James, Agoti, Charles N., 2021. Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014. Virology Journal, 18 (1)
- Awori, Juliet O., Kamau, Alice, Morpeth, Susan, Kazungu, Sidi, Silaba, Micah, Sande, Joyce, Karani, Angela, Nyongesa, Sammy, Mwarumba, Salim, Musyimi, Robert, Bett, Anne, Wande, Siti, Shebe, Mohammed, Ngama, Mwanajuma, Munywoki, Patrick K., Muturi, Neema, Nokes, D. James, Feikin, Daniel R., Murdoch, David R., Prosperi, Christine et al (Select to open full list), 2021. The etiology of pneumonia in HIV-uninfected children in Kilifi, Kenya : findings from the pneumonia etiology research for child health (PERCH) Study.. The Pediatric infectious disease journal, 40 (9S), pp. S29-S39
- Rose, Erica Billig, Nyawanda, Bryan O., Munywoki, Patrick K., Murunga, Nickson, Bigogo, Godfrey M., Otieno, Nancy A., Onyango, Clayton, Chaves, Sandra S., Verani, Jennifer R., Emukule, Gideon O., Widdowson, Marc?Alain, Nokes, D. James, Gerber, Susan I., Langley, Gayle E., 2021. Respiratory syncytial virus seasonality in three epidemiological zones of Kenya. Influenza and Other Respiratory Viruses, 15 (2), pp. 195-201
- Salimi, Vahid, Viegas, Mariana, Trento, Alfonsina, Agoti, Charles N., Anderson, Larry J., Avadhanula, Vasanthi, Bahl, Justin, Bont, Louis, Brister, J. Rodney, Cane, Patricia A., Galiano, Mónica, Graham, Barney S., Barney S., Eneida L., Hellferscee, Orienka, Henke, David M., Hirve, Siddhivinayak, Jackson, Sandra, Keyaerts, Els, Kragten-Tabatabaie, Leyla, Lindstrom, Stephen et al (Select to open full list), 2021. Proposal for Human Respiratory Syncytial Virus (HRSV) nomenclature below the species level. Emerging Infectious Diseases, 27 (6), pp. 1-9
- Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James, Munywoki, Patrick K., 2021. Infection patterns of endemic human coronaviruses in rural households in coastal Kenya [version 1; peer review: 1 approved, 2 approved with reservations]. Wellcome Open Research, 6
- Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S., Nokes, D. James, 2020. Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. Influenza and Other Respiratory Viruses
- Mwanga, Mike J., Owor, Betty E., Ochieng, John B., Ngama, Mwanajuma H., Ogwel, Billy, Onyango, Clayton, Juma, Jane, Njeru, Regina, Gicheru, Elijah, Oteno, Grieven P., Khagayi, Sammy, Agoti, Charles N., Bigogo, Godfrey M., Omore, Richard, Addo, Yaw O., Mapaseka, Seheri, Tate, Jacqueline E., Parashar, Umesh D., Hunsperger, Elizabeth, Verani, Jennifer R. et al (Select to open full list), 2020. Rotavirus group : a genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018. BMC Infectious Diseases, 20
- Mwanga, Mike J., Verani, Jennifer R., Omore, Richard, Tate, Jacqueline E., Parashar, Umesh D., Murunga, Nickson, Gicheru, Elijah, Breiman, Robert F., Nokes, D. James, Agoti, Charles N., 2020. Multiple introductions and predominance of 3 rotavirus group A genotype G3P[8] in Kilifi, coastal Kenya, 4 years after nationwide vaccine introduction. Pathogens, 9 (12)
- Nyiro, Joyce U., Bukusi, Elizabeth, Mwaengo, Dufton, Walumbe, David, Nyaguara, Amek, Nyawanda, Bryan, Otieno, Nancy, Berkley, James A., Munywoki, Patrick, Nokes, D. James, 2020. Implications of gestational age at antenatal care attendance on the successful implementation of a maternal respiratory syncytial virus (RSV) vaccine program in coastal Kenya. BMC Public Health, 20 (1)
- Brand, Samuel, Munywoki, Patrick, Walumbe, David, Keeling, Matthew James, Nokes, D. James, 2020. Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households. eLife, 9
- Khagayi, Sammy, Omore, Richard, Otieno, Grieven P., Ogwel, Billy, Ochieng, John B., Juma, Jane, Apondi, Evans, Bigogo, Godfrey, Onyango, Clayton, Ngama, Mwanajuma, Njeru, Regina, Owor, Betty E., Mwanga, Mike J., Addo, Yaw, Tabu, Collins, Amwayi, Anyangu, Mwenda, Jason M., Tate, Jacqueline E., Parashar, Umesh D., Breiman, Robert F. et al (Select to open full list), 2020. Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children. Clinical Infectious Diseases, 70 (11), pp. 2298-2305
- Otieno, G. P., Bottomley, C., Khagayi, S., Adetifa, I., Ngama, M., Omore, R., Ogwel, B., Owor, B. E., Bigogo, G., Ochieng, J. B., Onyango, C., Juma, J., Mwenda, J., Tabu, C., Tate, J. E., Addo, Y., Britton, T., Parashar, U. D., Breiman, R. F., Verani, J. R. et al (Select to open full list), 2020. Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya : a controlled interrupted time series analysis. Clinical Infectious Diseases, 70 (11), pp. 2306-2313
- Luka, Martha M., Kamau, Everlyn, Adema, Irene, Munywoki, Patrick K., Otieno, Grieven P., Gicheru, Elijah, Gichuki, Alex, Kibinge, Nelson, Agoti, Charles N., Nokes, D. James, 2020. Molecular epidemiology of human rhinovirus from one-year surveillance within a school setting in rural coastal Kenya. Open Forum Infectious Diseases, 7 (10)
- Nyasimi, Festus M., Owuor, D. Collins, Ngoi, Joyce M., Mwihuri, Alexander G., Otieno, Grieven P., Otieno, James R., Githinji, George, Nyiro, Joyce U., Nokes, D. James, Agoti, Charles N., 2020. Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season. Virus Evolution, 6 (2)
- Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O., Nokes, D. James, 2020. Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya. Wellcome Open Research, 5
- 'Kamau, Everlyn, 'Otieno, James R., 'Murunga, Nickson, 'Oketch, John W., 'Ngoi, Joyce M., 'de Laurent, Zaydah R., 'Mwema, Anthony, 'Nyiro, Joyce U., 'Agoti, Charles N., 'Nokes, D. James, 2020. 'Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. Virus Evolution, 6 (2)
- 'Adema, Irene Wangwa, 'Kamau, Everlyn, 'Nyiro, Joyce Uchi, 'Otieno, Grieven P., 'Lewa, Clement, 'Munywoki, Patrick K., 'Nokes, D. James, 2020. 'Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. Wellcome Open Research, 5
- 'Kamau, Everlyn, 'Otienoa, James R, 'Lewa, Clement S., 'Mwema , Anthony, 'Murunga, Nickson, 'Nokes, D. James, 'Agoti , Charles N., 2020. 'Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on. Scientific Reports, 10
- Kinyanjui, Timothy, Pan-Ngum, Wirichada, Saralamba, Sompob, Taylor, Sylvia, White, Lisa J., Nokes, D. James, 2020. Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting. Vaccine: X, 4
- Abidha, C., Nyiro, J., Kamau, E., Abdullahi, O., Nokes, D. James, Agoti, C. N., 2020. Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-2016. Virus Evolution, 6 (1)
- Mweu, Marshal M., Murunga, Nickson, Otieno, Juliet W., Nokes, D. James, 2020. Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya. Wellcome Open Research, 5
- Wagner, Moritz, Kombe, Ivy K., Kiti, Moses Chapa, Aziza, Rabia, Barasa, Edwine, Nokes, D. James, 2020. Using contact data to model the impact of contact tracing and physical distancing to control the SARS-CoV-2 outbreak in Kenya [version 1; peer review: 1 approved, 1 approved with reservations]. Wellcome Open Research, 5
- Kamau, Everlyn, Oketch, John W., de Laurent, Zaydah R., Phan, My V. T., Agoti, Charles N., Nokes, D. James, Cotton, Matthew, 2020. Whole genome sequencing and phylogenetic analysis of Human metapneumovirus strains from Kenya and Zambia. BMC Genomics, 21 (5)
- Agoti, Charles N., Phan, My V. T., Munywoki, Patrick K., Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotton, Matthew, Nokes, D. James, 2019. Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9
- Kiti, Moses Chapa, Melegaro, Alessia, Cattuto, Ciro, Nokes, D. James, 2019. Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors. Wellcome Open Research, 4
- Nyiro, Joyce, Kiyuka, Patience K., Mutunga, Martin N., Sande, Charles J., Munywoki, Patrick K., Scott, J. Anthony G., Nokes, D. James, 2019. Agreement between ELISA and plaque reduction neutralisation assay in detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya. Wellcome Open Research, 4
- Li, You, Reeves, Rachel M, Wang, Xin, Bassat, Quique, Brooks, W Abdullah, Cohen, Cheryl, Moore, David P, Nunes, Marta, Rath, Barbara, Campbell, Harry, Nair, Harish, Acacio, Sozinho, Alonso, Wladimir J, Antonio, Martin, Ayora Talavera, Guadalupe, Badarch, Darmaa, Baillie, Vicky L, Barrera-Badillo, Gisela, Bigogo, Godfrey, Broor, Shobha et al (Select to open full list), 2019. Global patterns in monthly activity of influenza virus, respiratory syncytial virus, parainfluenza virus, and metapneumovirus : a systematic analysis. The Lancet Global Health, 7 (8), pp. e1031-e1045
- Kombe, Ivy K., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James, Medley, Graham, 2019. Model-based estimates of transmission of respiratory syncytial virus within households. Epidemics, 27, pp. 1-11
- Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James, Munywoki, P. K., 2019. An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7), pp. 1049-1057
- Sand, Charles, Njunge, James, Mwongeli, Joyce, Mutunga, Martin, Chege, Timothy, Gicheru, Elijah, Gardiner, Elizabeth, Gwela, Agnes, Drysdale, Simon, Green, Christopher, Berkley, James, Nokes, D. James, Pollard, Andrew J., 2019. Airway response to respiratory syncytial virus has incidental antibacterial effects. Nature Communications, 10 (1)
- Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N., Nokes, D. James, 2019. Genome sequences of human coronavirus OC43 and NL63, associated with respiratory infections in Kilifi, Kenya. Microbiology Resource Announcements, 8 (46)
- Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M., Dunning Hotopp, Julie C., 2019. Complete genome sequences of dengue virus type 2 strains from Kilifi, Kenya. Microbiology Resource Announcements, 8 (4)
- Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N., Nokes, D. James, 2019. Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007?2016. BMC Infectious Diseases, 19 (1)
- Owor, Betty E., Mwanga, Mike J., Njeru, Regina, Mugo, Robert, Ngama, Mwanajuma, Otieno, Grieven P., Nokes, D. James, Agoti, C.N., 2018. Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013. Wellcome Open Research, 3
- Munywoki, Patrick K., Koech, Dorothy C, Agoti, Charles N., Cane, Patricia A., Medley, Graham, Nokes, D. James, 2018. Continuous invasion by respiratory viruses observed in rural households during a respiratory syncytial virus seasonal outbreak in coastal Kenya. Clinical Infectious Diseases, 67 (10), pp. 1559-1567
- Morpeth, Susan C., Munywoki, Patrick, Hammitt, Laura L., Bett, Anne, Bottomley, Christian, Onyango, Clayton O., Murdoch, David R., Nokes, D. James, Scott, J. Anthony G., 2018. Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children. Scientific Reports, 8 (1)
- Sande, Charles J., Mutunga, Martin, Muteti, Jacqueline, Berkley, James A., Nokes, D. James, Njunge, James, 2018. Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics. Scientific Reports, 8 (1)
- Otieno, J. R., Kamau, E. M., Oketch, J. W., Ngoi, J. M., Gichuki, A. M., Binter, ?., Otieno, G. P., Ngama, M., Agoti, C. N., Cane, P. A., Kellam, P., Cotten, M., Lemey, P., Nokes, D. James, 2018. Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution, 4 (2)
- Morobe, John Mwita, Nyiro, Joyce, Brand, Samuel, Kamau, Everlyn, Gicheru, Elijah, Eyase, Fredrick, Otieno, Grieven, Munywoki, Patrick, Agoti, Charles, Nokes, D. James, 2018. Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. Wellcome Open Research, 3
- Nyiro, Joyce Uchi, Munywoki, Patrick, Kamau, Everlyn, Agoti, Charles, Gichuki, Alex, Etyang, Timothy, Otieno, Grieven, Nokes, D. James, 2018. Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. Wellcome Open Research, 3
- Mohammed, Khadija Said, Kibinge, Nelson, Prins, Pjotr, Agoti, Charles N., Cotten, Matthew, Nokes, D. James, Brand, Samuel, Githinji, George, 2018. Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3
- Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D. James, Cotten, Matthew, 2018. Human coronavirus NL63 molecular epidemiology and evolutionary patterns in rural coastal Kenya. The Journal of Infectious Diseases, 217 (11), pp. 1728-1739
- Flasche, Stefan, Ojal, John, Le Polain de Waroux, Olivier, Otiende, Mark, O'Brien, Katherine L., Kiti, Moses, Nokes, D. James, Edmunds, W John, Scott, J. Anthony G., 2017. Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine : a modelling study based on data from PCV10 introduction in Kilifi, Kenya. BMC Medicine, 15 (1)
- Pan-Ngum, Wirichada, Kinyanjui, Timothy M., Kiti, Moses C., Taylor, Sylvia, Toussaint, Jean-François, Saralamba, Sompob, Van Effelterre, Thierry, Nokes, D. James, White, Lisa J., 2017. Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles : a consensus modelling approach. Vaccine, 35 (2), pp. 403-409
- Adetifa, Ifedayo M.O., Bwanaali, Tahreni, Wafula, Jackline, Mutuku, Alex, Karia, Boniface, Makumi, Anne, Mwatsuma, Pauline, Bauni, Evasius, Hammitt, Laura L., Nokes, D. James, Maree, Ephantus, Tabu, Collins, Kamau, Tatu, Mataza, Christine, Williams, Thomas N., Scott, J. Anthony G., 2017. Cohort profile : the Kilifi vaccine monitoring study. International Journal of Epidemiology, 46 (3), pp. 792-792h
- Otieno, James R., Kamau, Everlyn M., Agoti, Charles N., Lewa, Clement, Otieno, Grieven, Bett, Ann, Ngama, Mwanajuma, Cane, Patricia A., Nokes, D. James, 2017. Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010?2015. Emerging Infectious Diseases, 23 (2), pp. 264-271
- Wathuo, Miriam, Medley, Graham, Nokes, D. James, Munywoki, Patrick K., 2017. Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study. Wellcome Open Research, 1
- Shi, Ting, McAllister, David A., O'Brien, Katherine L., Simoes, Eric A. F., Madhi, Shabir A., Gessner, Bradford D., Polack, Fernando P., Balsells, Evelyn, Acacio, Sozinho, Aguayo, Claudia, Alassani, Issifou, Ali, Asad, Antonio, Martin, Awasthi, Shally, Awori, Juliet O., Azziz-Baumgartner, Eduardo, Baggett, Henry C., Baillie, Vicky L., Balmaseda, Angel, Barahona, Alfredo et al (Select to open full list), 2017. Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015 : a systematic review and modelling study. The Lancet, 390 (10098), pp. 946-958
- Scheltema, Nienke M., Gentile, Angela, Lucion, Florencia, Nokes, D. James, Munywoki, Patrick K., Madhi, Shabir A., Groome, Michelle J., Cohen, Cheryl, Moyes, Jocelyn, Thorburn, Kentigern, Thamthitiwat, Somsak, Oshitani, Hitoshi, Lupisan, Socorro P., Gordon, Aubree, Sánchez, José F., O'Brien, Katherine L., Gessner, Bradford D., Sutanto, Agustinus, Mejias, Asuncion, Ramilo, Octavio et al (Select to open full list), 2017. Global respiratory syncytial virus-associated mortality in young children (RSV GOLD) : a retrospective case series. The Lancet Global Health, 5 (10), pp. e984-e991
- Nyiro, Joyce U., Kombe, Ivy K., Sande, Charles J., Kipkoech, James, Kiyuka, Patience K., Onyango, Clayton O., Munywoki, Patrick K., Kinyanjui, Timothy M., Nokes, D. James, 2017. Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. PLoS One, 12 (5)
- Ngari, Moses M., Fegan, Greg, Mwangome, Martha K., Ngama, Mwanajuma J., Mturi, Neema, Scott, John Anthony Gerard, Bauni, Evasius, Nokes, D. James, Berkley, James A., 2017. Mortality after inpatient treatment for severe pneumonia in children : a cohort study.. Paediatric and Perinatal Epidemiology, 31 (3), pp. 233-242
- Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotten, Matthew, Nokes, D. James, 2017. Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3 (1)
- Kamau, Everlyn, Agoti, Charles N., Lewa, Clement S., Oketch, John, Owor, Betty E., Otieno, Grieven P., Bett, Anne, Cane, Patricia A., Nokes, D. James, 2017. Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. Journal of clinical virology
- Nyiro, Joyce Uchi, Sande, Charles Jumba, Mutunga, Martin, Kiyuka, Patience Kerubo, Munywoki, Patrick Kioo, Scott, John Anthony G., Nokes, D. James, 2016. Absence of association between cord specific antibody levels and severe respiratory syncytial virus (RSV) disease in early infants : a case control study from coastal Kenya. PLoS One, 11 (11)
- Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A., Nokes, D. James, 2016. Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Journal of Virology, 90 (10), pp. 4990-5002
- Emukule, Gideon O., Mott, Joshua A., Spreeuwenberg, Peter, Viboud, Cecile, Commanday, Alexander, Muthoka, Philip, Munywoki, Patrick K., Nokes, D. James, Velden, Koos van der, Paget, John W., 2016. Influenza activity in Kenya, 2007-2013 : timing, association with climatic factors, and implications for vaccination campaigns. Influenza and Other Respiratory Viruses
- Owor, Betty E., Masankwa, Geoffrey N., Mwango, Lilian C., Njeru, Regina W., Agoti, Charles N., Nokes, D. James, 2016. Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11. BMC Infectious Diseases, 16 (1)
- Agoti, Charles N., Kiyuka, Patience K., Kamau, Everlyn, Munywoki, Patrick K., Bett, Anne, van der Hoek, Lia, Kellam, Paul, Nokes, D. James, Cotten, Matthew, 2016. Human Rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4 (4), pp. 1-2
- Kiti, Moses C., Tizzoni, Michele, Kinyanjui, Timothy M., Koech, Dorothy C., Munywoki, Patrick K., Meriac, Milosch, Cappa, Luca, Panisson, André, Barrat, Alain, Cattuto, Ciro, Nokes, D. James, 2016. Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors. EPJ Data Science, 5 (1)
- Agoti, Charles N., Otieno, James R., Munywoki, Patrick K., Mwihuri, Alexander G., Cane, Patricia, Nokes, D. James, Kellam, Paul, Cotten, Matthew, Perlman, S., 2015. Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. Journal of Virology, 89 (7), pp. 3444-3454
- Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Kibirige, N., Kipkoech, J., Cane, Patricia, Medley, Graham, Nokes, D. James, 2015. Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiology and Infection, 143 (4), pp. 804-812
- Nyiro, Joyce U., Sande, Charles, Mutunga, Martin, Kiyuka, Patience K., Munywoki, Patrick K., Scott, J. Anthony G., Nokes, D. James, 2015. Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya. Vaccine, 33 (15), pp. 1797-1801
- Kinyanjui, Timothy M., House, Thomas A., Kiti, Moses C., Cane, Patricia, Nokes, D. James, Medley, Graham, 2015. Vaccine induced herd immunity for control of respiratory syncytial virus disease in a low-income country setting. PLoS One, 10 (9), pp. 1-16
- Poletti, Piero, Merler, Stefano, Ajelli, Marco, Manfredi, Piero, Munywoki, Patrick K., Nokes, D. James, Melegaro, Alessia, 2015. Evaluating vaccination strategies for reducing infant respiratory syncytial virus infection in low-income settings. BMC Medicine, 13 (1), pp. 1-11
- Hollingsworth, T. Déirdre, Langley, Ivor, Nokes, D. James, Macpherson, Eleanor E., McGivern, Gerry, Adams, Emily R., Bockarie, Moses J., Mortimer, Kevin, Reimer, Lisa J, Squire, Bertie, Torr, Stephen J., Medley, Graham, 2015. Infectious disease and health systems modelling for local decision making to control neglected tropical diseases. BMC Proceedings, 9 (Suppl 10)
- Munywoki, Patrick K., Koech, Dorothy C., Agoti, Charles N., Bett, Ann, Cane, Patricia A., Medley, Graham F., Nokes, D. James, 2015. Frequent asymptomatic respiratory syncytial virus infections during an epidemic in a rural Kenyan household cohort. Journal of Infectious Diseases, 212 (11), pp. 1711-1718
- Agoti, Charles N., Otieno, James R., Ngama, Mwanajuma, Mwihuri, Alexander G., Medley, Graham, Cane, Patricia A., Nokes, D. James, Kirkegaard, K., 2015. Successive respiratory syncytial virus epidemics in local populations arise from multiple variant introductions, providing insights into virus persistence. Journal of Virology, 89 (22), pp. 11630-11642
- Kiti, Moses Chapa, Kinyanjui, Timothy, Koech, Dorothy Chelagat, Munywoki, Patrick Kiio, Medley, Graham, Nokes, D. James, 2014. Quantifying age-related rates of social contact using diaries in a rural coastal population of Kenya. PLoS One, 9 (8)
- Agoti, Charles N., Otieno, James R., Gitahi, Caroline W., Cane, Patricia, Nokes, D. James, 2014. Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerging Infectious Diseases, 20 (6), pp. 950-959
- Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F., Nokes, D. James, 2014. Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, 14 (1)
- Sande, Charles J., Cane, Patricia, Nokes, D. James, 2014. The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants. Vaccine, 32 (37), pp. 4726-4729
- Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham, Nokes, D. James, 2014. The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, 209 (11), pp. 1685-1692
- Sande, Charles J., Mutunga, M. N., Okiro, Emelda A., Medley, Graham, Cane, Patricia, Nokes, D. James, 2013. Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort. Journal of Medical Virology, 85 (11), pp. 2020-2025
- Fuller, James A., Summers, Aimee, Katz, Mark A., Lindblade, Kim A., Njuguna, Henry, Arvelo, Wences, Khagayi, Sammy, Emukule, Gideon, Linares-Perez, Nivaldo, McCracken, John, Nokes, D. James, Ngama, Mwanajuma, Kazungu, Sidi, Mott, Joshua A., Olsen, Sonja J., Widdowson, Marc-Alain, Feikin, Daniel R., 2013. Estimation of the national disease burden of influenza-associated severe acute respiratory illness in Kenya and Guatemala : a novel methodology. PLoS One, 8 (Mumber 2)
- Sande, C. J., Mutunga, M. N., Medley, Graham, Cane, Patricia, Nokes, D. James, 2013. Group- and genotype-specific neutralizing antibody responses against respiratory syncytial virus in infants and young children with severe pneumonia. Journal of Infectious Diseases, 207 (3), pp. 489-492
- Munywoki, Patrick Kiio, Ohuma, Eric O., Ngama, Mwanajuma, Bauni, Evasius, Scott, J. Anthony G., Nokes, D. James, 2013. Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children, Kenya. Emerging Infectious Diseases, 19 (2), pp. 223-229
- Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia, Nokes, D. James, 2013. Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, 7 (6), pp. 1008-1012
- Anderson, L. J., Dormitzer, P. R., Nokes, D. James, Rappuoli, R., Roca, A., Graham, B.S., 2013. Strategic priorities for respiratory syncytial virus (RSV) vaccine development. Vaccine, 31, pp. B209-B215
- van Hoek, Albert Jan, Ngama, Mwanajuma, Ismail, Amina, Chuma, Jane, Cheburet, Samuel, Mutonga, David, Kamau, Tatu, Nokes, D. James, 2012. A cost effectiveness and capacity analysis for the introduction of universal rotavirus vaccination in Kenya : comparison between Rotarix and RotaTeq vaccines. PLoS One, Vol.7 (No.10)
- Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia, Nokes, D. James, 2012. Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, 206 (10), pp. 1532-1541
- Ohuma, E. O., Okiro, E. A., Ochola, R., Sande, C. J., Cane, Patricia, Medley, Graham, Bottomley, C., Nokes, D. James, 2012. The natural history of respiratory syncytial virus in a birth cohort : the influence of age and previous infection on reinfection and disease. American Journal of Epidemiology, Vol.176 (No.9), pp. 794-802
- Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann, Nokes, D. James, 2012. The incidence and clinical burden of respiratory syncytial virus disease identified through hospital outpatient presentations in Kenyan children. PLoS One, Vol.7 (No.12)
- Webb, Clare, Ngama, Mwanajuma, Ngatia, Anthony, Shebbe, Mohammed, Morpeth, Susan, Mwarumba, Salim, Bett, Ann, Nokes, D. James, Seale, Anna C., Kazungu, Sidi, Munywoki, Patrick, Hammitt, Laura L., Scott, J Anthony G., Berkley, James A., 2012. Treatment failure among Kenyan children with severe pneumonia--a cohort study. The Pediatric infectious disease journal, 31 (9), pp. e152-e157
- Onyango, Clayton O., Njeru, Regina, Kazungu, Sidi, Achilla, Rachel, Bulimo, Wallace, Welch, Stephen R., Cane, Patricia, Gunson, Rory N., Hammitt, Laura L., Scott, J. Anthony G., Berkley, James A., Nokes, D. James, 2012. Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010. Journal of Infectious Diseases, 206 (Supplement 1), pp. S61-S67
- Onyango, Clayton O., Welch, Stephen R., Munywoki, Patrick K., Agoti, Charles N., Bett, Ann, Ngama, Mwanajuma, Myers, Richard, Cane, Patricia, Nokes, D. James, 2012. Molecular epidemiology of human rhinovirus infections in Kilifi, coastal Kenya. Journal of Medical Virology, 84 (5), pp. 823-831
- Hammitt, L. L., Kazungu, S., Morpeth, S. C., Gibson, D. G., Mvera, B., Brent, A. J., Mwarumba, S., Onyango, C. O., Bett, A., Akech, D. O., Murdoch, D. R., Nokes, D. James, Scott, J. A. G., 2012. A preliminary study of pneumonia etiology among hospitalized children in Kenya. Clinical Infectious Diseases, Vol.54 (Suppl.2), pp. S190-S199
- Moïsi, Jennifer, Gatakaa, Hellen, Berkley, James A., Maitland, Kathryn, Mturi, Neema, Newton, Charles, Njuguna, Patricia, Nokes, D. James, Ojal, John, Bauni, Evasius, Tsofa, Benjamin, Peshu, Norbert, Marsh, Kevin, Williams, Thomas, Scott, J. Anthony G., 2011. Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis. Bulletin of the World Health Organization, Vol.89 (No.10), pp. 725-732
- Nyiro, Joyce U., Sanders, Eduard J., Ngetsa, Caroline, Wale, Steve, Awuondo, Ken, Bukusi, Elizabeth Anne, Price, Matthew A., Amornkul, Pauli N., Nokes, D. James, 2011. Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus Type 2 infection in semi-urban women in Kilifi, Kenya. BMC Infectious Diseases, Vol.11 (No.155)
- Hammitt, L. L., Kazungu, S., Welch, S. (Steve), Bett, Anne, Onyango, Clayton O., Gunson, R. N., Scott, J. Anthony G., Nokes, D. James, 2011. Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of Clinical Microbiology, 49 (6), pp. 2318-2320
- Munywoki, Patrick, Hamid, Fauzat, Mutunga, Martin, Welch, Steve, Cane, Patricia, Nokes, D. James, 2011. Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of Clinical Microbiology, Vol.49 (No.9), pp. 3365-3367
- Moïsi, Jennifer C, Nokes, D. James, Gatakaa, Hellen, Williams, Thomas N, Bauni, Evasius, Levine, Orin S, Scott, J Anthony G, 2011. Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization, Vol.89 (No.2), pp. 102-111
- Mwambi, H., Ramroop, S., White, L., Okiro, E., Nokes, D. James, Shkedy, Z., Molenberghs, G., 2011. A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort. Statistical Methods in Medical Research, Vol.20 (No.5), pp. 551-570
- Nair, Harish, Nokes, D. James, Gessner, Bradford D., Dherani, Mukesh, Madhi, Shabir A., Singleton, Rosalyn J., O'Brien, Katherine L., Roca, Anna, Wright, Peter F., Bruce, Nigel, Chandran, Aruna, Theodoratou, Evropi, Sutanto, Agustinus, Sedyaningsih, Endang R., Ngama, Mwanajuma, Munywoki, Patrick K., Kartasasmita, Cissy, Simoes, Eric A. F., Rudan, Igor, Weber, Martin W. et al (Select to open full list), 2010. Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. The Lancet, Vol.375 (No.9725), pp. 1545-1555
- Agoti, Charles N., Mbisa, Jean L., Bett, Ann, Medley, Graham, Nokes, D. James, Cane, Patricia, 2010. Intrapatient variation of the respiratory syncytial virus attachment protein gene. Journal of Virology, Vol.84 (No.19), pp. 10425-10428
- Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola, Steele, Duncan, 2010. Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1), pp. S180-S186
- Okiro, E. A., White, L. J., Ngama, Mwanajuma, Cane, Patricia, Medley, Graham, Nokes, D. James, 2010. Duration of shedding of respiratory syncytial virus in a community study of Kenyan children. BMC Infectious Diseases, Vol.10 (Article 15)
- Berkley, James A., Munywoki, Patrick, Ngama, Mwanajuma, Kazungu, Sidi, Abwao, John, Bett, Anne, Lassauniere, Ria, Kresfelder, Tina, Cane, Patricia, Venter, Marietjie, Scott, J. Anthony G., Nokes, D. James, 2010. Viral etiology of severe pneumonia among Kenyan infants and children. JAMA: The Journal of the American Medical Association, Vol.303 (No.20), pp. 2051-2057
- Ochola, Rachel, Sande, Charles, Fegan, Greg, Scott, P. D. (Paul D.), Medley, Graham, Cane, Patricia, Nokes, D. James, 2009. The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya. PLoS One, Vol.4 (No.12)
- Ohuma, E. O., Okiro, E. A., Bett, A., Abwao, John, Were, S., Samuel, Dhan, Vyse, A. J., Gay, N. J., Brown, D. W. G., Nokes, D. James, 2009. Evaluation of a measles vaccine campaign by oral-fluid surveys in a rural Kenyan district: interpretation of antibody prevalence data using mixture models. Epidemiology and Infection, Vol.13 (No.2), pp. 227-233
- Nokes, D. James, Ngama, Mwanajuma, Bett, Anne, Abwao, John, Munywoki, Patrick, English, M. (Mike), Scott, J. Anthony G., Cane, Patricia, Medley, Graham, 2009. Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical Infectious Diseases, Vol.49 (No.9), pp. 1341-1349
- Mwaniki, M.K., Nokes, D. James, Ignas, J., Munywoki, P., Ngama, Mwanajuma, Newton, R. J. C., Maitland, Kathryn, Berkley, James A., 2009. Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital : an observational study. Bulletin of the World Health Organization, Vol.87 (No.4), pp. 263-324
- Nokes, D. James, Abwao, John, Pamba, Allan, Peenze, Ina, Dewar, John, Maghenda, J. Kamino, Gatakaa, Hellen, Bauni, Evasius, Scott, J. Anthony G., Maitland, Kathryn, Williams, Thomas N., 2008. Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, Kenya. PL o S Medicine, Vol.5 (No.7)
- Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann, Cane, Patricia, Medley, Graham, Nokes, D. James, 2008. Factors associated with increased risk of progression to respiratory syncytial virus-associated pneumonia in young Kenyan children. Tropical Medicine & International Health, 13 (7), pp. 914-926
- White, Lisa J., Buttery, J., Cooper, Ben S., Nokes, D. James, Medley, Graham, 2008. Rotavirus within day care centres in Oxfordshire, UK : characterization of partial immunity. Journal of The Royal Society Interface, Vol.5 (No.29), pp. 1481-1490
- Nokes, D. James, Okiro, Emelda A., Ngama, Mwanajuma, Ochola, Rachel, White, Lisa J., Scott, P. D. (Paul D.), English, M. (Mike), Cane, Patricia, Medley, Graham, 2008. Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi district, Kenya. Clinical Infectious Diseases, Vol.46 (No.1), pp. 50-57
- Okiro, Emelda A., Sande, Charles, Mutunga, Martin, Medley, Graham, Cane, Patricia, Nokes, D. James, 2008. Identifying infections with respiratory syncytial virus by using specific immunoglobulin G (IgG) and IgA enzyme-linked immunosorbent assays with oral-fluid samples. Journal of Clinical Microbiology, Vol.46 (No.5), pp. 1659-1662
- White, L. J., Mandl, J. N., Gomes, M. G. M., Bodley-Tickell, A. T., Cane, Patricia, Perez-Brena, P., Aguilar, J. C., Siqueira, M. M., Portes, S. A., Straliotto, S. M., Waris, M., Nokes, D. James, Medley, Graham, 2007. Understanding the transmission dynamics of respiratory syncytial virus using multiple time series and nested models. Mathematical Biosciences, Vol.209 (No.1), pp. 222-239
- Wilson, Jamie N., Nokes, D. James, Medley, Graham, Shouval, Daniel, 2007. Mathematical model of the antibody response to hepatitis B vaccines: implications for reduced schedules. Vaccine, Vol.25 (No.18), pp. 3705-3712
- Scott, P. D. (Paul D.), Ochola, Rachel, Sande, Charles, Ngama, Mwanajuma, Okiro, Emelda A., Medley, Graham, Nokes, D. James, Cane, Patricia, 2007. Comparison of strain-specific antibody responses during primary and secondary infections with respiratory syncytial virus. Journal of Medical Virology, Vol.79 (No.12), pp. 1943-1950
- Nigatu, W., Nokes, D. James, Afework, A., Brown, D. W. G., Cutts, F. T., Jin, L., 2006. Serological and molecular epidemiology of measles virus outbreaks reported in Ethiopia during 2000-2004. JOURNAL OF MEDICAL VIROLOGY, 78 (12), pp. 1648-1655
- White, L. J., Waris, M., Cane, Patricia, Nokes, D. James, Medley, Graham, 2005. The transmission dynamics of groups A and B human respiratory syncytial virus (hRSV) in England & Wales and Finland: seasonality and cross-protection. Epidemiology and Infection, Vol.13 (No.2), pp. 279-289
- Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir, Nokes, D. James, 2003. Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2), pp. 285-291
- Enquselassie, F., Ayele, W., Dejene, A., Messele, T., Abebe, A., Cutts, Felicity, Nokes, D. James, 2003. Seroepidemiology of measles in Addis Ababa Ethiopia: implications for control through vaccination. Epidemiology and Infection, Vol.13 (No.3), pp. 507-519
- Abebe, A., Nokes, D. James, Dejene, A., Enquselassie, F., Messele, T., Cutts, Felicity, 2003. Seroepidemiology of hepatitis B virus in Addis Ababa Ethiopia: transmission patterns and vaccine control. Epidemiology and Infection, Vol.13 (No.1), pp. 757-770
- Wilson, J. N., Nokes, D. James, Carman, W. (William), 2000. Predictions of the emergence of vaccine-resistant hepatitis B in The Gambia using a mathematical model. Epidemiology and Infection, Vol.124 (No.2), pp. 295-307
- Cutts, Felicity, Abebe, A., Messele, T., Dejene, A., Enquselassie, F., Nigatu, Wondatir, Nokes, D. James, 2000. Sero-epidemiology of rubella in the urban population of Addis Ababa Ethiopia. Epidemiology and Infection, Vol.12 (No.3), pp. 467-479
- Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo, Medley, Graham, 1998. Seroepidemiology of group A rotavirus in suburban São Paulo, Brazil. Epidemiology and Infection, Vol.120, pp. 327-334
- Edmunds, W. John, Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C., Hall, A. J. (Andrew James), 1996. Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2), pp. 313-325
- McNamara, Paul S., Doorn, H. Rogier van, Adetifa, Ifedayo M.O., Nokes, D. James, 2024. Respiratory viruses and atypical bacteria. In Manson's Tropical Diseases, Elsevier, pp. 254-267
- Anderson, Roy M., Hollingsworth, T. Déirdre, Nokes, D. James, 2009. Mathematical models of transmission and control. Detels, Roger; Beaglehole, Robert; Gulliford, Mary Ann; Lansang, Martin (eds.), Oxford Textbook of Public Health, Oxford ; New York, Oxford University Press
- Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O., Nokes, D. James, 2021. Data for Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. Harvard Dataverse
- 'Kamau, Everlyn, 'Otieno, James R., 'Lewa, Clement S., 'Mwema, Anthony, 'Murunga, Nickson, 'Nokes, D. James, 'Agoti, Charles N., 2021. 'Respiratory Syncytial Virus genotype BA in Kilifi, Kenya : evolutionary dynamics, 15 years on. University of Warwick, School of Life Sciences
- 'Nyaguthii, Dickson Machira, 'Otieno, Grieven P., 'Kombe, Ivy K., 'Koech, Dorothy C., 'Mutunga, Martin, 'Medley, Graham F., 'Nokes, D. James, 'Munywoki, Patrick K., 2021. 'Data for Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. University of Warwick, School of Life Sciences
- 'Ojal, John, 'Brand, Samuel, 'Were, Vincent, 'Okiro, Emelda A., 'Kombe, Ivy K., 'Mburu, Caroline, 'Aziza, Rabia, 'Ogero, Morris, 'Agweyu, Ambrose, 'Warimwe, George M., 'Uyoga, Sophe, 'Adetifa, Ifedayo M. O., 'Scott, J. Anthony G., 'Otieno, Edward, 'Ochola-Oyier, Lynette Isabella, 'Agoti, Charles N., 'Kasera, Kadondi, 'Amoth, Patrick, 'Mwangangi, Mercy, 'Aman, Rashid et al (Select to open full list), 2021. 'Data for Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data. University of Warwick, School of Life Sciences
- 'Oketch, John W., 'Kamau, Everlyn, 'Mwema, Anthony, 'Lewa, Clement, 'Isoe, Everlyne, 'Nokes, D. James, 'Agoti, Charles N., 2021. 'Data for Comparative analysis of spatial-temporal patterns of human metapneumovirus (HMPV) and respiratory syncytial virus (RSV) in Africa using genetic data. University of Warwick, School of Life Sciences
- 'Kamau, Everlyn, 'Otieno, James Richard, 'Murunga, Nickson, 'Oketch, John W., 'Ngoi, Joyce M., 'de Laurent, Zaydah R., 'Mwema, Anthony, 'Nyrio, Joyce U., 'Agoti, Charles N., 'Nokes, D. James, 2020. 'Data for Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. University of Warwick, School of Life Sciences
- 'Adema, Irene Wangwa, 'Kamau, Everlyn, 'Nyiro, Joyce Uchi, 'Otieno, Grieven P., 'Lewa, Clement, 'Munywoki, Patrick K., 'Nokes, D. James, 2020. 'Data for Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. University of Warwick, School of Life Sciences
- Brand, Samuel, Munywoki, Patrick K., Walumbe, David, Keeling, Matthew James, Nokes, D. James, 2019. Data for Reducing RSV hospitalisation in a lower-income country by vaccinating mothers-to-be and their households. Harvard Dataverse
- Nyiro, Joyce U., Otieno, Grieven P., Nokes, D. James, 2018. Data for Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. Harvard Dataverse
- Morobe, John Mwita, Nyiro, Joyce U., Brand, Samuel, Kamau, Everlyn, Munywoki, Patrick K., Agoti, Charles N., Nokes, D. James, 2018. Data for Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. Harvard Dataverse
- 'Agoti, Charles N., 'Munywoki, Patrick K., 'Cotten, Matthew, 'Nokes, D. James, 2018. 'Data for Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. University of Warwick, Warwick Medical School
- 'Nyiro, Joyce U., 'Munywoki, Patrick K., 'Nokes, D. James, 2018. 'Data for Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. University of Warwick, Warwick Medical School
- Atkins, Katie, Baguelin, Marc, Brand, Samuel, Jit, Mark, Keeling, Matthew James, Kibinge, Nelson, Kinyanjui, Timothy, Medley, Graham, Melegaro, Alessia, Munywoki, Patrick, Nokes, D. James, Panovska-Griffiths, Jasmina, Pan-Ngum, Wurichada, Pellis, Lorenzo, White, Lisa, 2017. RSV modelling meeting. School of Life Science and Zeeman Institute SBIDER Centre, University of Warwick, UK and KEMRI-Wellcome Trust Research Programme , Kilifi, Kenya
- 'Nokes, D. James, 'Kamau, Evelyn, 2017. 'Data for Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. University of Warwick, Warwick Medical School
- 'Nokes, D. James, 'Otieno, James R., 2017. 'Data for Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. University of Warwick, Warwick Medical School
- 'Nokes, D. James, 'Otieno, James R., 2017. 'Data for Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010?2015. University of Warwick, Warwick Medical School
- Nair, Harish, Gessner, Bradford D., Nokes, D. James, Theodoratou, Evropi, Rudan, Igor, Madhi, Shabir A., Simoes, Eric A. F., Campbell, Harry, 2010. Childhood mortality due to respiratory syncytial virus - authors' reply. Lancet, The Lancet Publishing Group, pp. 872-873
- Medley, Graham, Nokes, D. James, 2009. Does viral diversity matter?. Science, American Association for the Advancement of Science, pp. 274-275
- Nigatu, Wondatir, Samuel, Dhan, Cohen, Bernard, Cumberland, Phillippa, Lemma, Eshetu, Brown, David W. G., Nokes, D. James, 2008. Evaluation of a measles vaccine campaign in Ethiopia using oral-fluid antibody surveys. Vaccine, Elsevier Ltd, pp. 4769-4774
- Nokes, D. James, Cane, Patricia, 2008. New strategies for control of respiratory syncytial virus infection. Current Opinion in Infectious Diseases, Lippincott Williams & Wilkins, pp. 639-643
| Title | Funder | Award start | Award end |
|---|---|---|---|
| COVID-19 Intervention Modelling for East Africa (CIMEA). Costed extension May '22 - May '23 to Ideate 85581/67166 | Wellcome Trust | 27 May 2022 | 26 May 2024 |
| DFID funded part of the award, WT part under 72944 - COVID-19 Intervention Modelling for East Africa (CIMEA). Costed extension May '22 - May '23 to Ideate 85581/67166 | DFID | 27 May 2022 | 26 May 2024 |
| Developing an integrated, nationally representative serosurveillance program in Kenya | Bill & Melinda Gates Foundation | 30 Nov 2021 | 29 Nov 2023 |
| SARS-CoV-2 new variant genomic surveillance project - Supplemental project to main project under Ideate 65581 and 67166 | Wellcome Trust | 01 May 2021 | 26 May 2023 |
| NIHR Global Health Research Group on the Application of Genomics and Modelling to the Control of Virus Pathogens (GeMVi) in East Africa at the University of Warwick. Costed ext linked to 56618 | National Institute for Health Research (NIHR DoH) | 01 Apr 2021 | 30 Sep 2022 |
| COVID-19 Intervention modelling for East Africa (CIMEA) (linked to 67166) | Wellcome Trust | 27 May 2020 | 26 May 2022 |
| SARS-CoV-2 new variant genomic surveillance project - Supplemental project to main project under Ideate 65581 and 67166. This is the DFID funded component linked to Ideate 69496 (Wellcome Trust component) | DFID | 01 May 2021 | 30 Apr 2022 |
| Serosurveillance Studies to Monitor and Understand the COVID-19 epidemic in Kenya | Department for International Development | 22 Jul 2020 | 31 Mar 2021 |
| NIHR Global Health Research Group on the Application of Genomics and Modelling to the Control of Virus Pathogens (GeMVi) in East Africa | National Institute for Health Research (DoH) | 01 Apr 2018 | 31 Mar 2021 |
| Supplement for IDEATE 37534: Defining pathways of respiratory virus transmission leading to improved intervention strategies (Investigator Award in Biomedical Science) | Wellcome Trust | 01 Jul 2020 | 31 Dec 2020 |
| Defining pathways of respiratory virus transmission leading to improved intervention strategies (Investigator Award in Biomedical Science) | Wellcome Trust | 01 Jul 2014 | 30 Jun 2020 |
| Comprehensive evaluation of the public health impact of rotavirus vaccine in Kenya: a Multi-site Surveillance Assessment | GAVI Alliance | 01 Jan 2017 | 31 Dec 2019 |
| Studying the pathways of spread of respiratory virus disease in Africa (SPReD-Africa) | Wellcome Trust | 01 Mar 2017 | 28 Feb 2019 |
| Sub-contract with main contractor University of Oxford for GSK funded research for development and modification of a suite of mathmatical models.Total value £7,753 | GlaxoSmithKline PLC | 31 Mar 2013 | 31 Mar 2015 |
| Quantifying protective immunity correlates for respiratory syncytial virus | PATH Vaccine Solutions | 01 Jul 2012 | 30 Jun 2014 |
| No Cost Extension for R-BS-JN3001 The Potential Impact of Vaccination on RSV and Other Respiratory Virus Pneumonia in the Developing C | Wellcome Trust | 20 Jun 2012 | 30 Jun 2014 |
| The Potential Impact of Vaccination on RSV and Other Respiratory Virus Pneumonia in the Developing Country Setting | Wellcome Trust | 01 Jul 2008 | 30 Jun 2013 |
| Household transmission of respiratory viruses: who acquires infection from whom | Wellcome Trust | 01 Mar 2010 | 29 Feb 2012 |
| Year 2 (Supplement to 15285 - Year 1) Measles Early Diagnosis and Population Immunity Evaluation using Oral Fluid - Refinement of Techniques | World Health Organisation | 01 Sep 2006 | 31 Aug 2007 |
| Infection dynamics of respiratory syncytial virus (RSV):molecular and immuno-epidemiological studies in rural Kenya. | Wellcome Trust | 01 Feb 2005 | 31 Jan 2007 |
| Measles Early Diagnosis and Population Immunity Evaluation using Oral Fluid: Refinement of Techniques | World Health Organisation | 01 Jul 2005 | 31 Aug 2006 |
| Infection Dynamics of Respiratory Syncytial Virus: Molecular and Immuno-Epidemiological Studies in Rural Kenya | Wellcome Trust | 14 Feb 2001 | 13 Feb 2005 |
| Infection Dynamics of Respiratory Syncytial Virus: Molecular and Immuno-Epidemiological Studies in Rural Kenya | Wellcome Trust | 14 Feb 2001 | 13 Feb 2005 |
| Infection Dynamics of Respiratory Syncytial Virus: Molecular and Immuno-Epidemiological Studies in Rural Kenya | Wellcome Trust | 14 Feb 2001 | 13 Feb 2005 |
| Infection Dynamics of Respiratory Syncytial Virus: Molecular and Immuno-Epidemiological Studies in Rural Kenya | Wellcome Trust | 14 Feb 2001 | 30 Sep 2004 |
| Infection Dynamics of Respiratory Syncytial Virus: Molecular and Immuno-Epidemiological Studies in Rural Kenya | Wellcome Trust | 01 Oct 2000 | 30 Sep 2004 |
| The Impact of Infant Vaccination on Childhood and Adult HBV and HDV Transmission in Northern Tunisia | Wellcome Trust | 01 Jul 2003 | 31 May 2004 |
| Evaluation of the Effectiveness of A Measles Campaign in Urban Ethiopia using Oral-Fluid Testing | World Health Organisation | 01 Dec 2002 | 31 Mar 2003 |
Supervised 23 PhD students, including 2 Ethiopian and 12 Kenyan