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Software releases and source code

The full source code for the software can be found on gitHub at

Version history:

Version Date Description
1.8.1 16/3/17 Initial beta release
1.9.0 22/3/17 Add -o option for outputting bam files with reads marked with assocociated feature
1.10.0 7/7/17

Slight change to calculation of _bias.txt output - includes changes to LiBiNormPlot.R R code

1.11.0 29/7/17

Improved consistency with htseq-count when the bam file is position ordered. Introduce -n none mode, which produces the same output as -z but without the htseq-compatibility tweaks

1.11.1 2/8/17

-w and -x debgug options exchanged. -i debug option changed to -v to avoid clash of command identifiers

1.11.2 11/8/17

Improved recognition and parsing of gff, gff3 and gtf files. Options specific to NCBI originated files are only enabled if the header identifies the data as NCBI originated.