The full source code for the software can be found on gitHub at https://github.com/NigelDyer/LiBiNorm
|1.8.1||16/3/17||Initial beta release|
|1.9.0||22/3/17||Add -o option for outputting bam files with reads marked with assocociated feature|
Slight change to calculation of _bias.txt output - includes changes to LiBiNormPlot.R R code
Improved consistency with htseq-count when the bam file is position ordered. Introduce -n none mode, which produces the same output as -z but without the htseq-compatibility tweaks
-w and -x debgug options exchanged. -i debug option changed to -v to avoid clash of command identifiers
Improved recognition and parsing of gff, gff3 and gtf files. Options specific to NCBI originated files are only enabled if the header identifies the data as NCBI originated.